Immune marker analysis: size of tumour tissue area crucial for survival prognosis

Study: size of the tissue sample is crucial for a reliable cancer prognosis *

27.03.2020: The method of choice used for preparing tissue samples can lead to biased results in the analysis of cancer patient survival. For microscopical analysis, full tissue samples provide a better picture of the immune cell activity in the tumour compared to tissue-sparing punch biopsies. A team led by the visceral surgeon Elisabeth S. Gruber and the molecular pathologist Lukas Kenner from MedUni Vienna and Vetmeduni Vienna demonstrated these findings by immunohistochemical investigation of tumour tissue of rectal cancer patients. With the second method, the density of immune cells in the tumour can be underestimated, which might result in a biased survival prognosis. The study has been published in the top journal Cancers.

In order to perform a microscopic analysis of a tissue sample, a paraffin section must be prepared. For this, the tissue sample is preserved and subsequently dehydrated and embedded in paraffin blocks. Further on, thin tissue sections of the samples are produced and applied to glass slides. Regularly, a tissue section of the whole surgical specimen of each patient is applied to one slide, so that the full extent of the tumour section is available for analysis.

For quick and efficient microscopic analysis of tumours of multiple patients, small punches of paraffin tumour tissue are compiled to one slide. This so-called Tissue Microarray (TMA) is a tissue-sparing procedure that minimises the costs of expensive immunohistochemical analyses. Both methods allow the staining of specific protein molecules in the tumour. Digital scanning of the tissue slides allows to quantify the stained protein molecules and assign them to specific tumour compartments by the use of a special software.

As part of this immunohistochemical study, Elisabeth S. Gruber from MedUni Vienna's Department of Surgery and Lukas Kenner from the Department for Experimental and Laboratory Animal Pathology at MedUni Vienna, Head of the Division of Laboratory Animal Pathology at Vienna University of Veterinary Medicine, member of the Comprehensive Cancer Center Vienna (CCC) of MedUni Vienna and the Vienna General Hospital (AKH Wien), examined the amount of T cells, as important players in tumour immune surveillance, in tissue samples of 75 patients operated on for rectal cancer. One cohort of patients received radiotherapy before the surgery, the other did not. The initial study hypothesis was that radiotherapy modulates tumour immune cell infiltration. In rectal cancer, the density of T cells present in the tumour is crucial for the patient's survival. Here, analysis was done using a special software, developed in collaboration with the Viennese company TissueGnostics, that allows analysis of a virtually established TMAs.

By comparing the two methods, the study authors Gruber and Kenner proved that the distribution of T cells in the tumour tissue is heterogeneous and thus might be underestimated using small tumour samples. The conclusion of the study is, that the assessment of tumoural immune cell density for the prognosis of rectal cancer survival is best and most reliably performed on the basis of a certain minimum area of tumour tissue. Lukas Kenner also works at Vetmeduni Vienna and the Christian Doppler Laboratory for Applied Metabolomics (CDL-AM) as well as for CBmed Vienna and the inter-university platform for "Comparative Laboratory Animal Pathology".

Press release Medical University of Vienna (27.03.2020)



Further information


Scientific Contact

Lukas Kenner

Department of Pathobiology

University of Veterinary Medicine Vienna (Vetmeduni Vienna)

T +43 1 25077-2421

E-Mail to Lukas Kenner




Released by

Nina Grötschl

Science Communication / Corporate Communications

University of Veterinary Medicine Vienna (Vetmeduni Vienna)

T +43 1 25077-1187

Mail to Nina Grötschl


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