Workstations for image processing and analysis


Workstations overview
We currently provide 4 workstations for various imaging-related applications including image processing, 3D visualization and analysis, and deconvolution of epifluorescence and confocal images. The workstations are located in our microscopy room and like the imaging equipment they can be booked via an online calendar. Workstations meet hardware requirements of computationally intensive applications such as 3D rendering or deconvolution.


WS 1 – Image Processing (ImageJ, MATLAB, Photoshop CS5, Corel Graphics Suite X5)
WS 2 – Image Processing (ImageJ, MATLAB, Photoshop CS5, Ilustrator, Ilastik, Imagescope) & 3D Reconstruction and rendering (Drishti, 3DSlicer)
WS 3 –
3D Reconstruction and rendering (Amira, Drishti)
WS 4
3D Reconstruction and rendering (VGStudio, Drishti)
– Remote Access to Huygens (Deconvolution), Arivis (3D Visualisation & Analysis)


We provide both commercial and non-commercial software for various applications of image processing and analysis. The software packages can be used for routine image processing (ImageJ, Photoshop), deconvolution (Huygens), for processing and visualizing 3D images (Amira, Drishti), and for designing scripts or macros for automated analysis (MATLAB, ImageJ).